Every second of the day, a set of molecular machines inside your cells—cyclin-dependent kinases (CDKs)—must switch on and off in precise sequence to control when cells divide and when genes are read. When these machines break, cells can grow uncontrollably, leading to cancer, neurological diseases, or rheumatoid arthritis. Scientists already know the atomic structure of simple CDK pairs, but real cells use these kinases as parts of much larger multi-protein assemblies. This project will rebuild those larger complexes in the lab and map their 3D shapes using X-ray crystallography. The goal is to see exactly how each CDK behaves differently when surrounded by its full team of partner proteins. This is fundamental science—there is no immediate drug or diagnostic. But the same approach that revealed the structure of a single CDK active site led directly to cancer drugs like Gleevec and Iressa. By showing where else on these complexes a drug might bind, this work could open up an entirely new class of CDK-targeted therapies, treating diseases that current inhibitors cannot reach.
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The growth and division of cells is strictly controlled at the molecular level by a number of enzymes that include the cyclin dependent protein kinases (CDKs). CDKs 1, 2, 4 and 6 are switched on and off in an orderly sequence, to ensure that cell division starts and stops at the required time. Other members of the CDK family (CDKs 7, 8 and 9) are also important for the control of transcription, the process by which genes are transcribed into messenger RNA that in turn serves as the template for protein synthesis. Regulation of transcription ensures the timely expression of proteins required for cell growth and differentiation. Errors in either the control of cell cycle progression or transcription can lead to uncontrolled cell growth and proliferation. Although CDK family members are closely related in sequence, biological studies have revealed that each has unique properties. Their activities can be regulated both by association with different families of regulatory proteins and by enzymatic modification of the protein sequence by addition of phosphoryl or acetyl residues to specific amino acid side chains. Our work, primarily using the technique of X-ray crystallography, allows us to see the structures of CDKs and the complexes they form at atomic resolution and so to learn how they differ from each other. The aim of this proposal is to build upon our research into the structural and functional properties of CDK/cyclin pairs, to establish how structural and biochemical properties are altered when they are located in multi-protein complexes. To this end we propose to identify and reconstitute selected CDK-containing complexes using heterologous expression systems. We will characterise these complexes by structural, biochemical, and biophysical methods. Aberrant CDK activity has been linked to cancer, neurological diseases, and rheumatoid arthritis In recent years, understanding a particular defect that leads to disease has led to exciting new medicines directed towards a particular target (e.g. the drugs Gleevec, Iressa and Herceptin for cancer treatment). A number of CDK-selective inhibitors are in clinical trials for the treatment of cancer. These agents all act by binding to the CDK active site to block CDK activity. Compounds that block other interactions made by CDK/cyclin complexes represent an alternative target for CDK-directed therapies. The work described in this project will aid the further development of such compounds and may also reveal additional targets for inhibitor development.
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