Completed Chemistry Cells, Biochemistry & Physiology

Dynamically-coupled enzyme catalysis: towards a step change in our understanding of enzyme catalysed reactions

In plain English

AI plain-English summary

Enzymes can accelerate chemical reactions by a factor of up to a trillion billion, but no one knows exactly how they do it. This project aims to settle a long-running debate about whether the jiggling and flexing of an enzyme’s protein structure—its internal motions—are essential to its catalytic power, or merely incidental. The researchers will combine high-speed structural imaging, computer simulations, and chemical biology to watch atomic movements that occur in less than a trillionth of a second, focusing on hydrogen transfer, a quantum-mechanical step at the heart of nearly all biological reactions. If they succeed, they will replace descriptive guesses with a quantitative, predictive model of enzyme catalysis. This is fundamental science with no immediate practical application. But a deeper understanding of how enzymes achieve their speed could eventually allow researchers to design custom enzymes for industrial chemistry, drug manufacturing, or breaking down environmental pollutants—applications that currently rely on trial and error rather than first principles.

View original technical description
The physical basis of the catalytic power of enzymes remains contentious despite sustained and intensive research efforts. Our knowledge of enzyme catalysis is predominantly descriptive gained from traditional protein crystallography and solution studies. Our ultimate goal is to introduce a step change in our understanding of catalysis by developing a complete and quantitative picture of dynamic catalytic processes in enzyme systems by adopting a synergistic and multidisciplinary approach, embracing ideas we have spearheaded from our work on quantum mechanical tunnelling effects, linked to protein dynamics, for enzyme-catalysed H-transfer reactions. The key question to be addressed is 'How do enzymes achieve high catalytic rates?' and 'What is the appropriate physical framework to model these reactions?'. Rate enhancements of up to 10 to the power 21 have been reported, but the physical basis of this catalytic power remains contentious, despite sustained and intensive research efforts. The role of protein motions in enzyme catalysis -- both in classical and quantum mechanical transfers -- is hotly debated. The very presence and identity of motions, coupled to catalysis, is currently one of the most important unanswered questions in enzyme catalysis, yet one of the most difficult to address experimentally. In recent years, we have established a multidisciplinary team, and have been at the fore of developments in this area, particularly in providing key experimental and computational evidence that supports full tunnelling models for enzyme-catalysed hydrogen transfer. Uniquely in this field, our research team has relied on a strong interplay between high resolution/time-resolved structural analysis, detailed computational simulations, chemical biology and fast reaction kinetics to develop, and provide experimental support for, new theoretical frameworks for enzyme catalysis. This application is built on these strengths and seeks to push new boundaries that will provide deeper understanding of dynamic processes/from millisecond to sub-picosecond/that drive enzyme catalysis. Hydrogen transfer -- an essential component of most biological reactions -- is a quantum problem. A crucial question of great current interest is how enzymes modulate the quantum dynamics of hydrogen transfer to achieve their outstanding catalytic properties. Despite recent progress, a detailed picture of the atomic motions accompanying the classical and quantum mechanical descriptions of chemical reactions has not been forthcoming. This is a major challenge that requires a multidisciplinary approach embracing structural biology, computational and physical methods. Thus, in this programme we will develop cutting-edge experimental and theoretical approaches to access the nature of motions coupled to catalysis. This also requires detailed understanding of all chemical aspects of the catalytic cycle. Moreover, it requires the development of new experimental approaches to investigate fast promoting motions in catalysis, which poses a major technical challenge to the field.

View the original record at the funder ↗

Researchers

David Leys (Co-Investigator)Jason Micklefield (Co-Investigator)Klaus Muller-Dethlefs (Co-Investigator)Michael Sutcliffe (Co-Investigator)Nigel Scrutton (Principal Investigator)Peter Gardner (Co-Investigator)Samuel De Visser (Co-Investigator)

Related Research

Grants with similar aims, by meaning.

Atomic resolution experimental interrogation of hydride quantum tunnelling in enzyme reaction chemistry
Catalysis in motion: accessing how fast motions facilitate catalysis through pump-probe and fast time resolved spectroscopies.
The use of high power THz radiation to probe low frequency protein vibrations that facilitate quantum tunnelling of hydrogen in enzyme systems
Reaction-coupled dynamics in DHFR catalysis
Combined experimental and computational investigations of a nucleophilic displacement reaction with a hydride leaving group

Original classification

Research Grant

Plain English summaries and category classifications on this site are generated by AI and may not perfectly reflect the original research.