Active Genetics & Molecular Biology Cells, Biochemistry & Physiology

Endogenous DNA damage and its repair during haematopoiesis

In plain English

AI plain-English summary

Every human cell produces formaldehyde and acetaldehyde as a byproduct of normal metabolism, and these simple chemicals can damage DNA. The researchers have discovered that the body relies on a two-tier defence system—first breaking down the aldehydes, then repairing any DNA damage they cause—to prevent mutations from accumulating. This matters because mutations from endogenous (internally generated) DNA damage are the dominant source of the genetic changes found in ageing cells and in most cancers. Until now, the known drivers of such damage were oxygen, water, and the mechanics of DNA replication. This work identifies a previously underappreciated culprit: everyday metabolic waste products that can chemically crosslink DNA strands. The project is fundamental science. It asks whether other common cellular metabolites also damage DNA, and how repair pathways cope. If successful, it will clarify the basic biology of mutation accumulation—knowledge that could eventually inform strategies to reduce cancer risk or slow aspects of ageing. Similar fundamental discoveries about DNA repair, such as the identification of mismatch repair, later led directly to cancer diagnostics and therapies. No immediate clinical application is expected, but a deeper understanding of how cells protect their genome from their own chemistry is a necessary step toward that goal.

View original technical description
Endogenous DNA damage is an important and dominant cause for the accumulation of mutations in all organisms. This can be seen in the mutation signatures associated with cells obtained from aged animals and in most cancers. The established factors and processes that cause endogenous DNA damage are oxygen, water, structured DNA and DNA replication and transcription. However, a fundamental question is whether there are other factors that are prevalent drivers for endogenous DNA damage and DNA repair pathways mitigate against such damage. Our research has identified that simple aldehydes such as formaldehyde and acetaldehyde are produced in our cells that can cause DNA damage possibly through the formation of DNA crosslinks. We uncovered that a two-tier protection mechanism (aldehyde detoxification and DNA repair) ensure that these metabolites do not cause DNA damage and mutations.

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Researchers

Ketan Patel (Principal Investigator)

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Mutational signatures of DNA damage and repair processes.
DNA damage response mechanisms
Molecular consequences of DNA damage and dysregulation
Molecular basis of inheritable DNA lesions on genome transformation.
Chromosome maintenance and repair in health and disease

Original classification

Intramural

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