Completed Genetics & Molecular Biology Cells, Biochemistry & Physiology

Factors that affect the regulation of splicing in Saccharomyces cerevisiae.

In plain English

AI plain-English summary

Every time a cell reads a gene, it must carefully edit the RNA message before it can be used—and this project investigates how that editing process is controlled and what happens when it goes wrong. The research focuses on splicing, the cellular mechanism that cuts out non-coding sections of RNA and stitches the meaningful parts together. Errors in splicing cause a range of human diseases, including a form of blindness called retinitis pigmentosa. Despite decades of work identifying the molecular machines that perform splicing, scientists still do not understand how these machines are regulated, how they maintain accuracy, or how defects in general splicing factors lead to specific diseases. This project uses yeast as a model to answer those questions. The work is fundamental science. It will map the molecular interactions that control splicing fidelity, the assembly of key splicing components, and the coupling of splicing to other cellular processes like transcription. If successful, it will reveal how a single faulty splicing factor can cause a specific disease, and identify potential targets for future therapies. Past fundamental splicing research has already led to the first approved drugs that correct splicing errors.

View original technical description
In the early years of splicing studies much effort was directed at identifying and characterising splicing factors and my lab played a major role in this activity. The key questions now are how the splicing reactions are regulated, how splicing specificity and fidelity are controlled, how pre-mRNA splicing may be coupled to other cellular processes, and how defects in general splicing factors cause specific diseases. This project will address these questions by studying the molecular and genetic interactions and specific functions of key splicing factors in the model organism Saccharomyces cerevisiae. AIM 1: To determine how individual RNA helicases are controlled and may activate each other to regulate sequential conformational changes in the spliceosome and to control splicing fidelity AIM 2: To understand molecular interactions that regulate U5 snRNP formation and function AIM 3 Identification of suppressors of mutations that cause retinitis pigmentosa. AIM 4: To investigate a Prp45p-mediated interaction between the transcription and splicing machineries and how Prp45p functions in each process, and to test the hypothesis that Prp45p functions as a component of a novel checkpoint.

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Researchers

Jean Beggs (EPMC Awardee)

Related Research

Grants with similar aims, by meaning.

Regulation of pre-mRNA splicing fidelity by the Nineteen Complex (NTC)
The minor spliceosome in health and disease
Unravelling key cellular machinery for spliceosome regulation
Biochemical and CryoEM studies of spliceosome activation.
Understanding pre-mRNA splicing regulation with novel inhibitors

Original classification

Programme Grant

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