Completed Genetics & Molecular Biology Cells, Biochemistry & Physiology

Structural Biology of DNA Repair: Spatial Organisation of the Multicomponent Complexes of Non-Homologous End Joining.

In plain English

AI plain-English summary

Every time a human cell’s DNA snaps in two—which happens thousands of times a day—a repair crew called Non-Homologous End Joining (NHEJ) must glue the broken ends back together without scrambling the genetic code. This project will map the three-dimensional architecture of the key protein machines that perform that repair. The problem is that these protein complexes are transient and loosely assembled, making them extremely difficult to capture in atomic detail. Without that structural map, researchers cannot understand why some people’s repair systems fail—leading to immune deficiencies or cancer—nor can they design drugs that deliberately block NHEJ in tumour cells to make radiation therapy more effective. If the team succeeds, they will produce the first high-resolution picture of how Ku70/Ku80, DNA-PKcs, DNA ligase IV, XRCC4, and XLF physically arrange themselves around a broken DNA end. This is fundamental science—there is no immediate clinical product. But structural biology has repeatedly turned such molecular blueprints into drug targets: knowing the exact shape of a protein pocket is what allows chemists to design molecules that fit it. For patients with inherited NHEJ defects, and for combination cancer therapies that exploit repair vulnerabilities, that knowledge is the necessary first step.

View original technical description
Our aim is to understand spatial organisation of non-obligate and transient complexes that mediate Non-Homologous End Joining (NHEJ), a major mode of repairing double strand breaks in human cells. Formation of Ku70/Ku80 heterodimeric ring around broken DNA ends is followed by recruitment of DNA-dependent protein kinase catalytic subunit (DNA-PKcs). We will define architecture of this complex, for which we have crystals, and structure of DNA-PKcs at higher resolution we have recently publish ed a 6.6 crystal structure. DNA ligase IV ligates broken DNA ends, and fidelity is stimulated by complexation with dimeric XRCC4. We will first divide-and-conquer DNA ligase IV, by defining structures of individual domains, and then extend our earlier work showing that C-terminal coiled-coil of XRCC4 is encircled by the Ligase IV linker and BRCT domains. XLF (structure from our laboratory) interacts with XRCC4; preliminary data from crystals, EM, SAXS and SPR of various complexes will al low us to define structures and interactions. Finally we will describe higher order assemblies of the Ku/DNA-PKcs/DNA complex with those involving Ligase IV, to give a picture of spatial organisation of NHEJ. This may lead to therapeutic applications for patients with defects in the pathway and for combination therapies for tumours.

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Researchers

Tom Blundell (EPMC Awardee)

Related Research

Grants with similar aims, by meaning.

Achieving Selectivity in Space and Time with DNA Double-Strand-Break Response and Repair: Molecular Stages and Scaffolds Come with Strings Attached
Mapping DNA repair interactions using EPR and molecular modelling.
Structural classification of NHEJ pathways; unravelling the role of Ku-binding proteins
Defining dynamic protein complexes in DNA repair by non-homologous end-joining
Molecular basis for repairing DNA double-strand breaks by non homologous end-joining

Original classification

Programme Grant

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