Completed Genetics & Molecular Biology Cells, Biochemistry & Physiology

Mechanisms of lineage restriction in development and reprogramming.

In plain English

AI plain-English summary

A frog embryo’s cells resist or accept a new identity depending on the epigenetic locks and molecular tools available inside them, and researchers are engineering those cells to find out why. Every cell in the body carries the same DNA, yet a heart cell and a skin cell behave completely differently. That difference is locked in by the epigenome—chemical marks on DNA and its packaging proteins—and by the set of co-factor proteins a cell happens to have. This project asks why some cells can be reprogrammed into a different type while others stubbornly refuse. The answer matters for regenerative medicine: if scientists could reliably turn one cell type into another, they could grow replacement tissues for diseases like Parkinson’s or diabetes. The team will first test how frog embryo cells respond when an engineered transcription factor is switched on or degraded. They will compare permissive tissues that change identity with non-permissive ones that resist, mapping gene activity and chromatin structure cell by cell. Then they will interfere with the epigenome or alter the co-factor mix to see what breaks the resistance. Finally, they will engineer mouse embryonic stem cells to express two conflicting lineage-specifying factors at once, watching how the cells resolve the clash. This is fundamental science. It will not produce a therapy tomorrow. But understanding how cells lock in their identity—and how those locks can be picked—is the necessary groundwork for any future attempt to reprogram cells safely and predictably.

View original technical description
Mechanisms that lead to the establishment and maintenance of cell identity are paramount for organismal health. They also underpin successful cellular reprogramming for disease modelling and cell replacement therapies. We will investigate the roles played by the epigenome and co-factors in regulating lineage transcription factor-mediated establishment and stabilisation of cell fate in vivo and in vitro. Firstly, controlled activation and degradation of engineered transcription factors (TFs) will be used to challenge cell identity in developing frog embryos. We will compare transcriptional profiles and chromatin landscape in “permissive” tissues that respond to TF over-expression by undergoing full lineage reprogramming, and “non-permissive” tissues that resist reprogramming, as well as probing heterogeneity of transcriptional response in individual cells. Secondly, mechanisms responsible for differential response to TF will be identified through interference with the epigenome as well as via alteration of the co-factors repertoire present in embryonic tissue. Finally, we will explore mechanisms underlying lineage fidelity in mammalian ES cells that have been engineered to co-express TFs specifying conflicting lineages. Overall, this work will reveal how the response to lineage determining TFs is controlled by integration of epigenetic features and co-factor availability in both the developing embryo and in reprogrammed mammalian cells.

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Researchers

Anna Philpott (EPMC Awardee)

Related Research

Grants with similar aims, by meaning.

Investigating repressive lineage fidelity factors in development
Epigenetic regulation of cell fate during early mammalian development
Dissecting the epigenetic control of totipotency.
Transcriptional control of cell fate decisions by chromatin remodelling proteins
Understanding how enhancer chromatin transduces extracellular signalling during developmental transitions in human pluripotent cells

Original classification

Investigator Award in Science

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