Completed Cells, Biochemistry & Physiology Genetics & Molecular Biology

Structure and Function of ribosomes

In plain English

AI plain-English summary

Ribosomes—the protein-making factories inside every cell—are stalling, and researchers want to know how cells notice and respond to these traffic jams. This work tackles three unresolved problems in how ribosomes work. First, how does the initiation machinery in human cells find the right starting point on a strand of messenger RNA? Second, how does a cell detect a ribosome that has stalled, especially when a trailing ribosome crashes into it? Third, how do mitochondrial ribosomes—which make only a tiny fraction of the proteins needed by these energy-producing organelles—insert those proteins into the mitochondrial membrane, and how does the rest of the mitochondrial protein supply get imported from the surrounding cytoplasm? The research is fundamental science. It does not aim to produce a drug, a device, or a diagnostic test. But understanding how cells sense stalled ribosomes could eventually illuminate what goes wrong in neurodegenerative diseases and ageing, where faulty protein production is a hallmark. Similarly, clarifying mitochondrial protein synthesis may shed light on rare mitochondrial disorders that affect energy metabolism. Past work on ribosome structure has already transformed antibiotic development; this deeper mechanistic picture could lay the groundwork for future therapeutic strategies.

View original technical description
With the basic structures of ribosomes from bacteria, eukaryotes and mitochondria established, the focus has now shifted to more complex problems such as initiation, regulation including during stress and mitochondrial protein synthesis. We shall focus on three areas: 1. Eukaryotic initiation. Following our progress on the role of factors in recruiting initiator tRNA to the 40S subunit to form the 43S complex and in start codon recognition, we propose to tackle the structure of the role of the multisubunit factor eIF4F in recruiting the 43S complex to the 5′ end of mRNA to form the 48S complex that scans along mRNA until the start codon is reached. 2. Recognition of stalled ribosomes. One of the ways the cell senses aberrant situations is by recognizing stalled ribosomes. Initial work in collaboration with Manu Hegde has suggested that certain factors recognize polysomes in which a trailing ribosome has collided with a leading stalled ribosome. We propose to elucidate the mechanism by which this recognition occurs and leads to downstream regulation. 3. Mitochondrial protein synthesis. We shall investigate how human and yeast mitochondrial ribosomes insert proteins into membranes. We will also investigate how the ~99% of mitochondrial proteins are imported from the cytoplasm.

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Researchers

Venki Ramakrishnan (EPMC Awardee)

Related Research

Grants with similar aims, by meaning.

Structural and functional analysis of ribosome initiation and ribosomal frameshifting.
Structural studies on macromolecular complexes in translational control and ribosome biogenesis
Structural studies of eukaryotic protein synthesis factor complexes eIF2B and eIF2/eIF2B, critical for translational control in eukaryotic cells
The Mitochondrial End Game : How key proteins control more than just translation termination
The role of initiation factor complex assembly and phosphorylation in controlling mRNA recruitment to ribosomes during differentiation.

Original classification

Investigator Award in Science

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