Completed Genetics & Molecular Biology Cells, Biochemistry & Physiology

Human Cell Atlas - development atlas extension

In plain English

AI plain-English summary

A single human embryo at six to seven weeks old—smaller than a pea—will be mapped cell by cell to create a three-dimensional digital atlas of early human development. This project fills a critical gap: we know how organs form in isolation, but not how they coordinate across the whole embryo during late organogenesis. Current atlases lack the molecular resolution needed to trace how cells decide their fates, migrate, and build tissues in concert. Without this blueprint, understanding developmental disorders—such as congenital heart defects or neural tube malformations—remains piecemeal. If successful, the atlas will provide a high-resolution molecular map of anatomical landmarks during human development. This could transform diagnosis of childhood disorders by linking genetic variants to specific cells and stages. It will also harmonise developmental knowledge across species, improving the relevance of animal models. For regenerative medicine and tissue engineering, knowing exactly how human tissues assemble in the embryo could guide efforts to rebuild organs from stem cells. The work is fundamental science—curiosity-driven, not applied. But similar foundational resources, like the first human genome map, later enabled personalised medicine and prenatal genetic testing. This atlas may do the same for developmental biology.

View original technical description
We propose to generate an in-depth single cell and spatial atlas of embryos during late organogenesis, at 6/7 post conception weeks (PCW). This project will form a blueprint for a complete HCA development cell atlas, which will ultimately cover all accessible developmental stages week by week. We will leverage genomics technologies to profile single cells from dissociated tissues and within intact tissue sections, and deploy cutting-edge computational methods to reconstruct, in silico, a three-dimensional atlas of the whole human embryo. This work will significantly extend our existing WSSS-funded Development Cell Atlas research programme, which is focused on organ-based profiling. Our reconstruction of a complete human embryo atlas will provide a blueprint for establishing high resolution molecular-based anatomical landmarks during human development, harmonizing developmental knowledge across species, and establishing a foundational resource with significant implications for developmental and childhood disorders, regenerative medicine and tissue engineering.

View the original record at the funder ↗

Researchers

Berthold Gottgens (EPMC Awardee)Elizabeth Robertson (EPMC Awardee)John Marioni (EPMC Awardee)Kerstin Meyer (EPMC Awardee)Muzlifah Haniffa (EPMC Awardee)Neil Lawrence (EPMC Awardee)Omer Bayraktar (EPMC Awardee)Sam Behjati (EPMC Awardee)Sarah Teichmann (EPMC Awardee)

Related Research

Grants with similar aims, by meaning.

An Extended Pilot for the Human Cell Atlas: Adult tissues, human development and inflammation-mediated pathologies
The Development Cell Atlas - Data Coordination Centre
Human Gonad Developmental Cell Atlas
Human Lung Cell Atlas Project: genetic regulation of foetal and healthy adult lung cell states in 3D spatial resolution
Generating a global view of cell lineage trees during early mouse embryo development

Original classification

Strategic Support: Science

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