Active Genetics & Molecular Biology Brain & Nervous System

Harnessing the diversity of African genomes to drive novel disease gene and pathway discovery for Amyotrophic Lateral Sclerosis (ALS) Spectrum Disorders

In plain English

AI plain-English summary

African genomes—among the most genetically diverse on the planet—have been almost entirely excluded from the search for genes that cause motor neuron disease. The project will sequence the full genomes of roughly 600 African patients with amyotrophic lateral sclerosis (ALS) and related disorders, using long-read technology that can detect large structural variants hidden from standard short-read sequencing. This matters because nearly all ALS gene discovery has been done in people of European ancestry, leaving a vast reservoir of genetic variation untapped. African populations carry unique combinations of rare and common variants that could reveal entirely new disease pathways or protective factors. Without this data, the global understanding of ALS biology remains incomplete, and therapies developed from European genomes may not work equally well for African patients. If successful, the research could identify novel genes and mechanisms driving ALS, opening new targets for drug development. It will also build sequencing infrastructure, bioinformatics expertise, and reference genomic data for Africa—a region decades behind in the genomic revolution. In the longer term, this could improve diagnostic accuracy and clinical care for ALS patients across the continent. The project is primarily a fundamental science effort in disease gene discovery, but with clear downstream implications for equitable therapy development and African research capacity.

View original technical description
Large-scale next-generation sequencing has rapidly advanced our understanding of the genetic architecture of Amyotrophic Lateral Sclerosis (ALS) spectrum disorders which is driving therapy development. Apart from our recent description of the first 100 cases, highly diverse and unique African genomes have not contributed to ALS gene discovery efforts. Critical insights into ALS biology remain to be gained from the application of long-read sequencing to study large structural variants and illuminate regions of the genome “hidden” to short-read technology. This project proposes to include Africans in this next frontier of disease gene discovery by expanding the generation of whole genome sequencing data on African patients with ALS and related disorders (~600 over 6 years). The merits of this project lie not in sample numbers, but rather in the deep phenotyping and genomic characterization of unique ALS phenotypes in diverse population groups which have the potential to make novel discoveries with global impact. Africa remains decades behind the genomic revolution due to lack of sequencing infrastructure, bioinformatics expertise and African genomic reference data. This project will strengthen the Neurogenomics Research Programme at UCT’s Neuroscience Institute, support African genomics capacity building and ultimately improve clinical care for ALS patients in Africa.

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Researchers

Melissa Nel (EPMC Awardee)

Related Research

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A Large-scale Multi-omics Study To Investigate The Role Of Human Endogenous Retroviruses And Structural Variants In Amyotrophic Lateral Sclerosis
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Next Generation Gene Hunting in Amyotrophic Lateral Sclerosis
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Original classification

Career Development Award

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