Active Cells, Biochemistry & Physiology Brain & Nervous System

FAST-EM – Fast Accessible Serial Transmission EM

In plain English

AI plain-English summary

Mapping the complete wiring diagram of a brain—every neuron and every connection—currently requires months of imaging and thousands of pounds per sample. This project aims to slash both the time and cost by redesigning a specialised electron microscopy technique called GridTape TEM. The problem is straightforward: the only way to get a complete connectome (a full map of neural connections) is electron microscopy, but existing methods are too slow and expensive to scale beyond a handful of tiny samples. This keeps researchers from comparing brains across individuals or studying larger animals like lizards. The team will remove the need for costly support films that coat each sample, and redesign the imaging process to minimise slow, expensive stage movements. Crucially, they are designing the system to work on standard transmission electron microscopes already sitting in labs worldwide, not just on custom-built machines. If successful, this would make high-throughput brain mapping accessible to many more labs. The immediate impact is on fundamental neuroscience—researchers could finally map entire brains of honeybees or geckos, revealing how neural circuits evolve and function. There is no direct daily-life application here; this is curiosity-driven science. But past work in connectomics has already informed artificial neural networks and neurological disease models, so a cheaper, faster method could accelerate those unexpected payoffs.

View original technical description
Mapping the connectome of whole brains of multiple individuals or of larger animal species is very valuable to neuroscience. Presently, the only techniques capable of delivering complete connectomes are costly in time and money. The gold standard is electron microscopy, which delivers densely imaged volumes at nanometre resolution from which all neuronal arbours and synapses are reconstructed. GridTape TEM offers among the lowest cost per yield, but presents barriers to broad adoption such as high costs per sample and restricted hardware availability. Here, we propose to develop GridTape TEM beyond its original conception for low-cost, high-throughput imaging. To this end, we will design out the need for costly support films to drastically reduce costs per sample, and devise a new approach to imaging that minimises costly sample stage movement to greatly improve throughput. To ease application beyond our lab, the design targets a variety of existing transmission electron microscopes already available in facilities world wide. As a proof of principle, the extended goals include imaging the brain of a honeybee and of a small gecko lizard. Our proposal holds the promise of democratising access to high-throughput volume electron microscopy, opening new avenues of research within neuroscience and beyond.

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Researchers

Albert Cardona (EPMC Awardee)Elizabeth Barsotti (EPMC Awardee)Marta Zlatic (EPMC Awardee)

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Original classification

Bioimaging Technology Development Award

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