Active Genetics & Molecular Biology Cells, Biochemistry & Physiology

A molecular understanding of homologous recombination in the context of chromatin

In plain English

AI plain-English summary

Every time a chromosome breaks, a protein called RAD51 must form a sticky filament that searches through the entire genome to find the matching DNA sequence and stitch the break back together. This process—homologous recombination—is essential for keeping our cells from accumulating lethal or cancer-causing mutations, yet scientists have never seen how RAD51 actually works inside the crowded, tightly packed environment of real chromosomes. The problem is that most studies have stripped away the proteins that normally wrap DNA into chromatin, leaving a gap in understanding how repair happens in living cells. This research will combine two approaches: building purified RAD51 complexes in the lab for structural imaging, and using advanced microscopy to watch RAD51 clusters—called foci—form and disappear inside cells after a break. If successful, this work will reveal the molecular choreography of a fundamental DNA repair machine in its natural context. Because defects in homologous recombination are linked to breast and ovarian cancers—and because cancer cells often disable this pathway—a clearer picture of how RAD51 navigates chromatin could eventually guide strategies to make tumours more vulnerable to existing treatments. For now, this is fundamental science: understanding a core cellular process that has remained stubbornly invisible.

View original technical description
Maintaining genome stability and integrity is an essential and challenging cellular process. Homologous recombination (HR) is a major DNA repair pathway while during the highly related meiotic recombination (MR), parental chromosomes exchange and recombine. HR and MR thus play paradoxically distinct roles in maintaining genome stability while promoting genetic diversity. At the heart of HR/MR is the RAD51 recombinase, which forms nucleoprotein filaments to search and pair with homologous DNA sequences, leading to repair or recombination. The function of RAD51 is carefully modulated by partner proteins. Thus far, our mechanistic understanding of HR/MR is limited, especially with partner proteins and in the context of chromatin. This is in part due to the challenges in purifying proteins and associated complexes for structural studies, and in making nucleosomes and arrays. Significantly, RAD51 forms clusters (foci) upon double-strand breaks which disappear after repair. It is unclear what are within these foci and how HR is carried out in cells. I am proposing an ambitious program combining in vitro structural and mechanistic studies with in situ imaging, to provide a molecular understanding of RAD51 and HR and advance our mechanistic understanding of DNA repair, which will also help our understanding of meiotic recombination.

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Researchers

Xiaodong Zhang (EPMC Awardee)

Related Research

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Original classification

Discovery Award

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