Active Genetics & Molecular Biology Cells, Biochemistry & Physiology

RNA processing and gene regulation

In plain English

AI plain-English summary

Every time a cell reads a gene, it must carefully edit the RNA message before building a protein—and when that editing goes wrong, disease can follow. This research investigates two fundamental quality-control systems in human cells: alternative splicing, which allows a single gene to produce multiple different proteins, and nonsense-mediated decay (NMD), a surveillance mechanism that destroys faulty RNA messages before they can be translated into harmful truncated proteins. The problem is that when these systems malfunction, the consequences are severe—misregulation of alternative splicing contributes to many diseases, and defects in NMD can worsen the impact of up to one third of all human genetic disorders. This is primarily fundamental science: the researchers aim to understand the basic rules governing how cells process and police their RNA. There is no immediate practical application, but deeper knowledge of these mechanisms could eventually inform strategies for diagnosing or treating genetic diseases where RNA quality control plays a role. Past discoveries in RNA biology have already led to mRNA vaccines and gene-silencing therapies; this work adds to that foundation.

View original technical description
The flow of genetic information from DNA to RNA to protein involves complex mechanisms of regulation, most of which act downstream of the process of transcription, which produces RNA molecules from a DNA template. RNA splicing is a process that eliminates non-coding intervening sequences from precursor RNAs and that joins together coding sequences to form the mature mRNA that is exported from the nucleus for translation to produce proteins in the cell. Sometimes, a series of different mRNA molecules can be produced from the same precursor RNA, in a process termed alternative splicing. This allows a single gene to increase its coding capacity, leading to the synthesis of structurally and functionally distinct forms of a protein that influence different cellular processes. We study the regulation of alternative splicing and how its misregulation can lead to human disease. We are also focusing on a surveillance mechanism, termed Nonsense-mediated decay or NMD, that eliminates mRNAs with premature termination codons that would otherwise give rise to truncated proteins that are potentially harmful for the cell. This is important since the NMD response affects the severity of up to one third of all human genetic diseases. We expect to facilitate a greater understanding of how the production of cellular RNAs is controlled, and how its dysregulation contributes to human disease.

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Researchers

Javier Caceres (Principal Investigator)

Related Research

Grants with similar aims, by meaning.

Post-transcriptional regulation of Gene Expression
Regulation of transcript stability by splicing in non-coding gene regions
Nuclear RNA surveillance of genome expression: From yeast to mammals
Gene regulation
Control of RNA processing during RNA polymerase II transcription

Original classification

Intramural

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